I believe the "horror stories" you're referring to is those who used the Upgrade retail discs version, not the Anytime Upgrade download. Plus they upgraded over the old Vista OS already on the computer.
They weren't upgrading a Windows 7 install to a higher edition of Windows 7, such as you did. Remember that the install discs, whether x86 or x64 have ALL the editions of Windows 7 on them, it is the KEY that makes the difference. It is the "ei.cfg" file in the "sources" folder that tells the installer which edition to install from the DVD.
A few months ago I posted on how to delete that file and make an All-In-One install DVD using PowerISO.
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Anyway, I was originally going to upgrade through the Anytime Upgrade, but it was given such a bad rap that I decided against it. Being that I wanted Pro, and not wanting to screw up again, I decided to go the Anytime Upgrade route.
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This sentence you have contradicted yourself. WTH?